In this earlier post, I described how the stereochemistry of π2+π2 cycloadditions occurs suprafacially if induced by light, and how one antarafacial component appears if the reaction is induced by heat alone. I also noted how Woodward and Hoffmann (WH) explained that violations to their rules were avoided by mandating a change in mechanism requiring stepwise pathways with intermediates along the route. Here I illustrate how the stereochemistry of a thermal π2+π2 cycloaddition can indeed avoid an antarafacial component by performing appropriate gymnastic contortions instead of a mechanistic change (a WH violation certainly in the letter of their law, if not their spirit).
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Archive for the ‘Interesting chemistry’ Category
Molecular gymnastics in 2+2 cycloadditions.
Wednesday, December 14th, 2011Mechanistic morphemes. Perisolvolysis of a cyclopropyl chloride.
Tuesday, December 13th, 2011There are many treasures in Woodward and Hoffmann’s (WH) classic monograph. One such is acetolysis of the endo chloride (green), which is much much faster than that of the exo isomer (red). The explanation given in their article (p 805) confines itself to succinctly stating that only loss of the endo halogen can be concerted with a required disrotatory ring opening of the cyclopropane. Demonstrating the truth of this statement by computational modelling turns out to be an interesting challenge. (more…)
So near and yet so far. The story of the electrocyclic ring opening of a cyclohexadiene.
Tuesday, December 6th, 2011My previous three posts set out my take on three principle categories of pericyclic reaction. Here I tell a prequel to the understanding of these reactions. In 1965, Woodward and Hoffmann[cite]10.1021/ja01080a054[/cite] in their theoretical analysis (submitted Nov 30, 1964) for which the Nobel prize (to Hoffmann only of the pair, Woodward having died) was later awarded. But in the same year, Elias Corey[cite]10.1021/ja00952a037[/cite] reported the conclusion of a project started several years earlier (first reported (DOI: 10.1021/ja00907a030, Nov 1, 1963) to synthesize the sesquiterpene dihydrocostunolide.
The chemistry behind a molecular motor. The four wheels?
Friday, November 25th, 2011In the previous post, I wrote about the processes that might be involved in a molecular wheel rotating. A nano car has four wheels, and surely the most amazing thing is how the wheels manage to move in synchrony. This is one hell of a tough problem, and I do not attempt an answer here, but simply record an odd observation.
Under the hood of a nano car: the chemistry behind a molecular motor.
Saturday, November 19th, 2011The world’s smallest nano car was recently driven a distance of 6nm along a copper track. When I saw this, I thought it might be interesting to go under the hood and try to explain what makes its engine tick and its fuel work. (more…)
The dawn of organic reaction mechanism: the prequel.
Sunday, November 13th, 2011Following on from Armstrong’s almost electronic theory of chemistry in 1887-1890, and Beckmann’s radical idea around the same time that molecules undergoing transformations might do so via a reaction mechanism involving unseen intermediates (in his case, a transient enol of a ketone) I here describe how these concepts underwent further evolution in the early 1920s. My focus is on Edith Hilda Usherwood, who was then a PhD student at Imperial College working under the supervision of Martha Whitely.1
Driving the smallest car ever made: a chemical perspective.
Thursday, November 10th, 2011Fascination with nano-objects, molecules which resemble every day devices, is increasing. Thus the world’s smallest car has just been built[cite]10.1038/nature10587[/cite]. The mechanics of such a device can often be understood in terms of chemical concepts taught to most students. So I thought I would have a go at this one!
Atropisomerism in Taxol. An apparently simple bond rotation?
Tuesday, November 1st, 2011My previous post introduced the interesting guts of taxol. Two different isomers can exist, and these are called atropisomers; one has the carbonyl group pointing up, the other down. The barrier to their interconversion in this case is generated by a rotation about the two single bonds connecting the carbonyl group to the rest of the molecule. Introductory chemistry tells us that the barrier for rotation about such single bonds is low (i.e. fast at room temperature). But is that true here?
Computers 1967-2011: a personal perspective. Part 4. Moore’s Law and Molecules.
Friday, October 28th, 2011Moore’s law describes a long-term trend in the evolution of computing hardware, and it is often interpreted in terms of processing speed. Here I chart this rise in terms of the size of computable molecules. By computable I mean specifically how long it takes to predict the geometry of a given molecule using a quantum mechanical procedure.