Archive for the ‘Interesting chemistry’ Category

Caesium trifluoride: could it be made?

Saturday, November 23rd, 2013

Mercury (IV) tetrafluoride attracted much interest when it was reported in 2007[cite]10.1002%2Fanie.200703710[/cite] as the first instance of the metal being induced to act as a proper transition element (utilising d-electrons for bonding) rather than a post-transition main group metal (utilising just s-electrons) for which the HgF2 dihalide would be more normal (“Is mercury now a transition element?”[cite]http://dx.doi.org/10.1021%2Fed085p1182[/cite]). Perhaps this is the modern equivalent of transmutation! Well, now we have new speculation about how to induce the same sort of behaviour for caesium; might it form CsF3 (at high pressures) rather than the CsF we would be more familiar with.[cite]10.1038/nchem.1754[/cite] Here I report some further calculations inspired by this report.

(more…)

The subtle effect of dispersion forces on the shapes of molecules: benzyl magnesium bromide.

Sunday, November 10th, 2013

In the previous post I mentioned in passing the Grignard reagent benzyl magnesium bromide as having tetrahedral coordination at Mg. But I have now noticed, largely through spotting Steve Bachrach’s post on “Acene dimers – open or closed?” another geometric effect perhaps worthy of note, certainly one not always noted in the past; that of dispersion forces.

(more…)

Multiple personalities of Magnesium.

Tuesday, November 5th, 2013

The following is a short question in a problem sheet associated with introductory organic chemistry.

(more…)

The world ash tree of the computer hardware industry… crystalline silicon from 1854.

Thursday, October 31st, 2013

The element silicon best represents the digital era of the mid 20th century to the present; without its crystalline form, there would be no computers (or this blog). Although it was first prepared in pure amorphous (powder) form around 1823[cite]http://doi.org/10.1021/ed009p1386[/cite] by Berzelius, it was not until 1854 that Henri Sainte-Claire Deville made it in crystalline form, using metallic aluminium to isolate it. He described it [cite]http://doi.org/10.1021/ed009p1386[/cite] as having a “metallic luster”.

(more…)

The NMR spectra of methano[10]annulene and its dianion. The diatropic/paratropic inversion.

Saturday, October 26th, 2013

The 1H NMR spectrum of an aromatic molecule such as benzene is iconic; one learns that the unusual chemical shift of the protons (~δ 7-8 ppm) is due to their deshielding by a diatropic ring current resulting from the circulation of six aromatic π-electrons following the Hückel 4n+2 rule. But rather less well-known is the spectacular inversion of these effects as induced by the paratropic circulation of 4n electrons. A 4n+2 rule can be converted to a 4n one by the addition of two electrons, and chemically this can be done by reduction with lithium metal to form a dianion. Fortunately, this experiment has been done for a molecule known as methano[10]annulene. This is a 4n+2 aromatic molecule 1 with ten π-electrons (n=2) that can be reduced with lithium metal to form an ion-pair 2 comprising lithium cations and the twelve π-electron (4n, n=3) methano[10]annulene dianion.[cite]10.1002/anie.198816921[/cite]

(more…)

Six vs ten aromatic electrons?

Sunday, October 20th, 2013

Homoaromaticity is a special case of aromaticity in which π-conjugation is interrupted by a single sp3 hybridized carbon atom (it is sometimes referred to as a suspended π-bond with no underlying σ-foundation). But consider the carbene shown below. This example comes from a recently published article[cite]10.1021/ja407116e[/cite] which was highlighted on Steve Bachrach’s blog. Here aromaticity has resulted from a slightly different phenomenon, whereby a 4π-electron planar (and hence nominally anti-aromatic) molecule is elevated to aromatic peerage by promoting the two carbene σ-electrons to have π-status. 

(more…)

A short non-bonding H…H interaction (continued)

Wednesday, October 2nd, 2013

This is a continuation of the discussion started on Steve Bachrach’s blog about a molecule with a very short H…H interaction involving two Si-H groups with enforced proximity. It had been inferred from the X-ray structure[cite]10.1021/ja407398w[/cite] that the H…H distance was in the region of 1.50Å. It’s that cis-butene all over again! So is that H…H region a bond? Is it attractive or repulsive? Go read Steve’s blog first.

(more…)

An example of an extreme gauche effect: FSSF.

Saturday, September 21st, 2013

The best known example of the gauche effect is 1,2-difluoroethane, which exhibits a relatively small preference of ~0.5 kcal/mol for this conformer over the anti orientation, which is also a minimum. But FSSF, which I discussed in the previous post, beats this hands down! It also, by the way, must surely be the smallest molecule (only four atoms) which could be theoretically resolved into two enantiomers (possibly at say 273K?).

(more…)

Patterns of behaviour: serendipity in action for enantiomerisation of F-S-S-Cl

Thursday, September 19th, 2013

Paul Schleyer sent me an email about a pattern he had spotted, between my post on F3SSF and some work he and Michael Mauksch had done 13 years ago with the intriguing title “Demonstration of Chiral Enantiomerization in a Four-Atom Molecule“.[cite]http://doi.org/d8g2nw[/cite] Let me explain the connection, but also to follow-up further on what I discovered in that post and how a new connection evolved.FSSF3-gen

(more…)

A two-publisher model for the scientific article: narrative+shared data.

Sunday, September 15th, 2013

I do go on rather a lot about enabling or hyper-activating[cite]10.1039/P29950000007[/cite] data. So do others[cite]10.1038/nj7461-243a[/cite]. Why is sharing data important?

(more…)