Semibullvalene is a molecule which undergoes a facile [3,3] sigmatropic shift. So facile that it appears this equilibrium can be frozen out at the transition state if suitable substituents are used. This is a six-electron process, which leads to one of those homologous questions; what happens with ten electrons?
The ten-electron homologue of semibullvalene.
September 21st, 2012The direct approach is not always the best: butadiene plus dichlorocarbene
September 19th, 2012The four-electron thermal cycloaddition (in reverse a cheletropic elimination) of dichlorocarbene to ethene is a classic example of a forbidden pericyclic process taking a roundabout route to avoid directly violating the Woodward-Hoffmann rules. However, a thermal six-electron process normally does take the direct route, as in for example the Diels-Alder cycloaddition as Houk and co have recently showed using molecular dynamics[cite]10.1073/pnas.1209316109[/cite]. So can one contrive a six-electron cycloaddition involving dichlorocarbene?
Predicted properties of a candidate for a frozen semibullvalene.
September 17th, 2012I am following up on one unfinished thread in my previous post; a candidate was proposed in which the transition state for [3,3] sigmatropic rearrangement in a semibullvalene might be frozen out to become instead a stable minimum.
Frozen Semibullvalene: a holy grail (and a bis-homoaromatic molecule).
September 15th, 2012Semibullvalene is an unsettling molecule. Whilst it has a classical structure describable by a combination of Lewis-style two electron and four electron bonds, its NMR behaviour reveals it to be highly fluxional. This means that even at low temperatures, the position of these two-electron bonds rapidly shifts in the equilibrium shown below. Nevertheless, this dynamic behaviour can be frozen out at sufficiently low temperatures. But the barrier was sufficiently low that a challenge was set; could one achieve a system in which the barrier was removed entirely, to freeze out the coordinates of the molecule into a structure where the transition state (shown at the top) became instead a true minimum (bottom)? A similar challenge had been set for freezing out the transition state for the Sn2 reaction into a minimum, the topic also of a more recent post here. Here I explore how close we might be to achieving inversion of the semibullvalene [3,3] sigmatropic potential.
What is the range of values for a (sp3)C-C(sp3) single bond length?
September 12th, 2012Here is a challenge: what is the longest C-C bond actually determined (in which both carbon termini are sp3 hybridised)? I pose this question since Steve Bachrach has posted on how to stabilize long bonds by attractive dispersive interactions, and more recently commenting on what the longest straight chain alkane might be before dispersive interaction start to fold it (the answer appears to be C17).
The Sn2 reaction: followed up.
September 12th, 2012An obvious issue to follow-up my last post on the (solvated) intrinisic reaction coordinate for the Sn2 reaction is how variation of the halogen (X) impacts upon the nature of the potential.
The Sn2 reaction and the anomaly of carbon.
September 6th, 2012It was three years ago that I first blogged on the topic of the Sn2 reaction. Matthias Bickelhaupt had suggested that the Sn2 reaction involving displacement at a carbon atom was an anomaly; the true behaviour was in fact exhibited by the next element down in the series, silicon. The pentacoordinate species shown below (X=Si) is naturally a minimum, and the fact that for carbon (X=C) one gets instead a transition state resulting in a significant thermal barrier (~ 20 kcal/mol) was a manifestation of abnormal behaviour.
Digital repositories. An update to the update.
August 13th, 2012Dynamic effects in nucleophilic substitution at trigonal carbon (with Na+) revisited.
August 13th, 2012This reaction looks simple but is deceptively complex. To recapitulate: tolyl thiolate (X=Na) reacts with the dichlorobutenone to give two substitution products in a 81:19 ratio, a result that Singleton and Bogle argue arises from a statistical distribution of dynamic trajectories bifurcating out of a single transition state favouring 2 over 3. On the grounds (presumably) that the presence of both the cation X (=Na+) and H-bonded solvent (ethanol) are uninfluential, neither species was explicitly included in the transition state model used to derive the dynamics. I speculated whether in fact the spatial distribution of counterions and solvent (set up by explicit hydrogen bonds and O…Na+ interactions) might in fact be perturbed from un-influential randomness by co-ordination to the carbonyl group present in the system. I also raised the issue of what the origin of the electronic effects leading to the major product might be.