Previously, I had noted that Corey reported in 1963/65 the total synthesis of the sesquiterpene dihydrocostunolide. Compound 16, known as Eudesma-1,3-dien-6,13-olide was represented as shown below in black; the hydrogen shown in red was implicit in Corey’s representation, as was its stereochemistry. As of this instant, this compound is just one of 64,688,893 molecules recorded by Chemical Abstracts. How can we, in 2011, validate this particular entry, and resolve the stereochemical ambiguity? Here I discuss one approach (a vision if you like of the semantic web). Read the rest of this entry »
Validating the chemical literature heritage. Eudesma-1,3-dien-6,13-olide.
December 8th, 2011So near and yet so far. The story of the electrocyclic ring opening of a cyclohexadiene.
December 6th, 2011My previous three posts set out my take on three principle categories of pericyclic reaction. Here I tell a prequel to the understanding of these reactions. In 1965, Woodward and Hoffmann[cite]10.1021/ja01080a054[/cite] in their theoretical analysis (submitted Nov 30, 1964) for which the Nobel prize (to Hoffmann only of the pair, Woodward having died) was later awarded. But in the same year, Elias Corey[cite]10.1021/ja00952a037[/cite] reported the conclusion of a project started several years earlier (first reported (DOI: 10.1021/ja00907a030, Nov 1, 1963) to synthesize the sesquiterpene dihydrocostunolide.
A modern take on pericyclic sigmatropic migrations.
November 29th, 2011Another common type of pericyclic reaction is the migration of hydrogen or carbon along a conjugated chain, as in the [1,3] migration of a carbon as shown below. As before, I explore the stereochemistry of the thermal and photochemical reactions.
A modern take on pericyclic cycloaddition. Dimerisation of cis-butene
November 28th, 2011The π2 + π2 cyclodimerisation of cis-butene is the simplest cycloaddition reaction with stereochemical implications. I here give it the same treatment as I did previously for electrocyclic pericyclic reactions.
A modern take on the pericyclic electrocyclic ring opening of cyclobutene.
November 26th, 2011Woodward and Hoffmann published their milestone article “Stereochemistry of Electrocyclic Reactions” in 1965. This brought maturity to the electronic theory of organic chemistry, arguably started by the proto-theory of Armstrong some 75 years earlier. Here, I take a modern look at the archetypal carrier of this insight, the ring opening of dimethylcyclobutene.
The chemistry behind a molecular motor. The four wheels?
November 25th, 2011In the previous post, I wrote about the processes that might be involved in a molecular wheel rotating. A nano car has four wheels, and surely the most amazing thing is how the wheels manage to move in synchrony. This is one hell of a tough problem, and I do not attempt an answer here, but simply record an odd observation.
Under the hood of a nano car: the chemistry behind a molecular motor.
November 19th, 2011The world’s smallest nano car was recently driven a distance of 6nm along a copper track. When I saw this, I thought it might be interesting to go under the hood and try to explain what makes its engine tick and its fuel work. Read the rest of this entry »
The peroxidation of alkynes: things are not always what they seem.
November 16th, 2011The epoxidation of an alkene to give an oxirane is taught in introductory organic chemistry. Formulating an analogous mechanism for such reaction of an alkyne sounds straightforward, but one gradually realises that it requires raiding knowledge from several other areas of (perhaps slightly more advanced) chemistry to achieve a joined up approach to the problem. I had indeed hinted in a previous post that the mechanism for oxidation of acetylene to ketene might be an interesting arrow pushing challenge to set a bright tutorial group, and it was that self-hint that has led me to here. I now explore how my “arrow pushing” intuition stands up to a computational examination.
The dawn of organic reaction mechanism: the prequel.
November 13th, 2011Following on from Armstrong’s almost electronic theory of chemistry in 1887-1890, and Beckmann’s radical idea around the same time that molecules undergoing transformations might do so via a reaction mechanism involving unseen intermediates (in his case, a transient enol of a ketone) I here describe how these concepts underwent further evolution in the early 1920s. My focus is on Edith Hilda Usherwood, who was then a PhD student at Imperial College working under the supervision of Martha Whitely.1
Driving the smallest car ever made: a chemical perspective.
November 10th, 2011Fascination with nano-objects, molecules which resemble every day devices, is increasing. Thus the world’s smallest car has just been built[cite]10.1038/nature10587[/cite]. The mechanics of such a device can often be understood in terms of chemical concepts taught to most students. So I thought I would have a go at this one!