March 19th, 2017
A pyrophoric metal is one that burns spontaneously in oxygen; I came across this phenomenon as a teenager doing experiments at home. Pyrophoric iron for example is prepared by heating anhydrous iron (II) oxalate in a sealed test tube (i.e. to 600° or higher). When the tube is broken open and the contents released, a shower of sparks forms. Not all metals do this; early group metals such as calcium undergo a different reaction releasing carbon monoxide and forming calcium carbonate and not the metal itself. Here as a prelude to the pyrophoric reaction proper, I take a look at this alternative mechanism using calculations.
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Tags: Aluminium, calculated free energy barrier, Carbon monoxide, Chemical elements, Chemistry, higher activation energy, Iron, Matter, metal, metal oxalates, Oxide, pyrophoric metal, Pyrophoricity, Reducing agents
Posted in crystal_structure_mining, reaction mechanism | 1 Comment »
March 16th, 2017
This is a spin-off from the table I constructed here for further chemical examples of the classical/non-classical norbornyl cation conundrum. One possible entry would include the transition state for inversion of methane via a square planar geometry as compared with e.g. NiH4 for which the square planar motif is its minimum. So is square planar methane a true transition state for inversion (of configuration) of carbon?
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Tags: Chemistry, Methane, Molecular geometry, Orbital hybridisation, Planar, Square planar molecular geometry, Stereochemistry
Posted in reaction mechanism | 2 Comments »
March 12th, 2017
This is another of those posts that has morphed from an earlier one noting the death of the great chemist George Olah. The discussion about the norbornyl cation concentrated on whether this species existed in a single minimum symmetric energy well (the non-classical Winstein/Olah proposal) or a double minimum well connected by a symmetric transition state (the classical Brown proposal). In a comment on the post, I added other examples in chemistry of single/double minima, mapped here to non-classical/classical structures. I now expand on the examples related to small aromatic or anti-aromatic rings.
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Tags: antiaromaticity, aromaticity, Évariste Galois, Carbocation, Chemistry, equilibrium minimum energy position, George Andrew Olah, George Olah, great chemist, Jahn-Teller, minimum symmetric energy, Olah, Physical organic chemistry, Saul Winstein, symmetric energy potentials
Posted in Interesting chemistry | No Comments »
March 10th, 2017
George Olah passed away on March 8th. He was part of the generation of scientists in the post-war 1950s who had access to chemical instrumentation that truly revolutionised chemistry. In particular he showed how the then newly available NMR spectroscopy illuminated structures of cations in solvents such “Magic acid“. The obituaries will probably mention his famous “feud” with H. C. Brown over the structure of the norbornyl cation (X=CH2+), implicated in the mechanism of many a solvolysis reaction that characterised the golden period of physical organic chemistry just before and after WWII.
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Tags: 2-Norbornyl cation, aqueous solutions, Chemical bond, chemical instrumentation, Chemistry, George Andrew Olah, George Olah, Ion association, Magic acid, Michael Dewar, Molecule, Nature, Physical organic chemistry, Reactive intermediates, spectroscopy
Posted in Interesting chemistry | 17 Comments »
March 10th, 2017
A few years back, I did a post about the Pirkle reagent[1] and the unusual π-facial hydrogen bonding structure[2] it exhibits. For the Pirkle reagent, this bonding manifests as a close contact between the acidic OH hydrogen and the edge of a phenyl ring; the hydrogen bond is off-centre from the middle of the aryl ring. Here I update the topic, with a new search of the CSD (Cambridge structure database), but this time looking at the positional preference of that bond and whether it is on or off-centre.
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References
- H.S. Rzepa, M.L. Webb, A.M.Z. Slawin, and D.J. Williams, "? Facial hydrogen bonding in the chiral resolving agent (S)-2,2,2-trifluoro-1-(9-anthryl)ethanol and its racemic modification", Journal of the Chemical Society, Chemical Communications, pp. 765, 1991. https://doi.org/10.1039/c39910000765
- H.S. Rzepa, M.H. Smith, and M.L. Webb, "A crystallographic AM1 and PM3 SCF-MO investigation of strong OH ⋯π-alkene and alkyne hydrogen bonding interactions", J. Chem. Soc., Perkin Trans. 2, pp. 703-707, 1994. https://doi.org/10.1039/p29940000703
Tags: Ammonia, Ammonium, aromaticity, Cations, Centroid, chemical bonding, Chemistry, Hydrogen bond, Phenyl group
Posted in crystal_structure_mining | No Comments »
March 5th, 2017
Tags: API, chemical databases, City: London, Company: TfL, Government, Greater London, Local government in London, London, Passenger Transportation Ground & Sea - NEC, PDF, Public transport, Route planning software, search engine, Sustainable transport, Technology/Internet, Transport, Transport for London, travel apps, travel data, XML
Posted in Chemical IT | No Comments »
March 5th, 2017
Cyclobutadiene is one of those small iconic molecules, the transience and instability of which was explained theoretically long before it was actually detected in 1965.[1] Given that instability, I was intrigued as to how many crystal structures might have been reported for this ring system, along with the rather more stable congener cyclo-octatetraene. Here is what I found.
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References
- L. Watts, J.D. Fitzpatrick, and R. Pettit, "Cyclobutadiene", Journal of the American Chemical Society, vol. 87, pp. 3253-3254, 1965. https://doi.org/10.1021/ja01092a049
Tags: antiaromaticity, Chemistry, cyclobutadiene, Instability, Nature, Physical organic chemistry, Physics, search query
Posted in crystal_structure_mining | 4 Comments »